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Yes. Those steps and the pack project materials step in the next paragraph. All are simple and should be quick to do, and hopefully we'll have more insight into what's going on afterwards.
OK, I did what I think you asked. I created two versions of the project, using the audio file directly downloaded from google drive. In one, I kept the data (where I stretched the audio). In the other, I deleted everything.
I then changed the audio file by pasting in a longer version and changing the name.
Then I re-loaded the (now messed up) with-data project file and write it out from Pack Project Directory.
I recorded all of this, so you can see what I did (it only took a few minutes). Those videos are in the uploaded zip file as well:
https://drive.google.com/open?id=1GjiSJTRejURQm4EjSLKPB1yaP2LWf3mJ
Thanks,
Paul